There is no Master/Slave jumpers on SATA drives. As far as your boot problem till you removed the drive, it probably had your boot order threw off, you need to make the drive with your OS the main boot drive in the bios. If the drive is new and making clicking sounds,RMA it or take it back to the store even if its the second one you tried!
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NZXT Apollo
Athlon 64 X2 5600 3.3ghz.
Gigabyte GA MA770 DS3
G Skill DDR2 1066 944mhz. 4gb.
PNY 8800GT/VD964
W/D RE2 Sata 3.0 500gb.
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