i think that is you whipe w/e partition that has linux on it, grub will be gone...
when i had ubuntu linux (i didn't like it) but when i installed it i was told to make 2 partitions but one of which was like 512MB... and then i also had the main linux partition... u have to clear both partitions to make it work.... i think... that is what i did... if i am understanding you correectly
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