It would do no harm to run Checkdisk, right click your C:, properties, tools, error checking and tick at least the file check, the bottom check box will also check sectors on the HD.
After pressing OK a warning will come up so do a restart and before it boots into windows it will scan. This is for XP but can't be too far away for Vista.
The other way is in a DOS command CHKDSK C: /F
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Operator: Dave
Operating System: XP Professional SP2
Processor: Intel E6750 Core Duo@3.20GHz
Graphics: Nvidia 8500GT
C: Drive 500GB
D: Drive 250GB
Memory: 2GB
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